Czauderna, Tobias

Prof. Dr. rer. nat.

Positionen

Professor, Fachgruppe Informatik, Fakultät Angewandte Computer- und Biowissenschaften

Forschungsschwerpunkt

Angewandte Informatik Forschungsschwerpunkt

ausgewählte Publikationen

Journalartikel
- Design considerations for representing systems biology information with the Systems Biology Graphical Notation. Journal of Integrative Bioinformatics. 2022
- COVID19 Disease Map, a computational knowledge repository of virus–host interaction mechanisms. Molecular Systems Biology. e10387.1-e10387.22. 2021
- Visual exploration of large metabolic models. Bioinformatics. 4460-4468. 2021
- Specifications of standards in systems and synthetic biology: status and developments in 2020. Journal of Integrative Bioinformatics. 2020
- Streamline pair selection for comparative flow field visualization. Visual Computing for Industry, Biomedicine, and Art. 20. 2020
- Systems biology graphical notation markup language (SBGNML) version 0.3. Journal of Integrative Bioinformatics. 2020
- The Data Visualisation and Immersive Analytics Research Lab at Monash University. Visual Informatics. 41-49. 2020
- OntoPlot: A Novel Visualisation for Non-hierarchical Associations in Large Ontologies. IEEE Transactions on Visualization and Computer Graphics. 1-1. 2019
- Systems Biology Graphical Notation: Process Description language Level 1 Version 2.0. Journal of Integrative Bioinformatics. 2019
- VR system for spatio-temporal visualization of tweet data and support of map exploration. Multimedia Tools and Applications. 32849-32868. 2019
- ContextuWall: Multi-site collaboration using display walls. Journal of Visual Languages & Computing. 35-42. 2018
- Genome-scale metabolic modeling of responses to polymyxins inPseudomonas aeruginosa. GigaScience. 2018
- 3D-Stereoscopic Immersive Analytics Projects at Monash University and University of Konstanz. Electronic Imaging. 179-187. 2017
- Stereoscopic Space Map – Semi-immersive Configuration of 3D-stereoscopic Tours in Multi-display Environments. Electronic Imaging. 1-9. 2016
- Toward Community Standards and Software for Whole-Cell Modeling. IEEE Transactions on Biomedical Engineering. 2007-2014. 2016
- Metabolomics, Standards, and Metabolic Modeling for Synthetic Biology in Plants. Frontiers in Bioengineering and Biotechnology. 2015
- Systems Biology Graphical Notation: Activity Flow language Level 1 Version 1.2. Journal of Integrative Bioinformatics. 340-381. 2015
- Systems Biology Graphical Notation: Entity Relationship language Level 1 Version 2. Journal of Integrative Bioinformatics. 281-339. 2015
- Meeting report from the fourth meeting of the Computational Modeling in Biology Network (COMBINE). Standards in Genomic Sciences. 1285-1301. 2014
- Conversion of KEGG metabolic pathways to SBGN maps including automatic layout. BMC Bioinformatics. 250. 2013
- Path2Models: large-scale generation of computational models from biochemical pathway maps. BMC Systems Biology. 116. 2013
- Translation of SBGN maps: Process Description to Activity Flow. BMC Systems Biology. 115. 2013
- Creating interactive, web-based and data-enriched maps with the Systems Biology Graphical Notation. Nature Protocols. 579-593. 2012
- MetaCrop 2.0: managing and exploring information about crop plant metabolism. Nucleic Acids Research. D1173-D1177. 2012
- OPTIMAS-DW: A comprehensive transcriptomics, metabolomics, ionomics, proteomics and phenomics data resource for maize. BMC Plant Biology. 245. 2012
- Software support for SBGN maps: SBGN-ML and LibSBGN. Bioinformatics. 2016-2021. 2012
- VANTED v2: a framework for systems biology applications. BMC Systems Biology. 139. 2012
- Wiring diagrams in biology: towards the standardized representation of biological information. Trends in Biotechnology. 555-557. 2012
- HTPheno: An image analysis pipeline for high-throughput plant phenotyping. BMC Bioinformatics. 148. 2011
- Editing, validating and translating of SBGN maps. Bioinformatics. 2340-2341. 2010
- Intraspecific hybrids of Arabidopsis thaliana revealed no gross alterations in endopolyploidy, DNA methylation, histone modifications and transcript levels. Theoretical and Applied Genetics. 215-226. 2010
- Novel Developments of the MetaCrop Information System for Facilitating Systems Biological Approaches. Journal of Integrative Bioinformatics. 2010
- Different Hormonal Regulation of Cellular Differentiation and Function in Nucellar Projection and Endosperm Transfer Cells: A Microdissection-Based Transcriptome Study of Young Barley Grains. Plant Physiology. 1436-1452. 2008
Konferenzpaper
- Tangible Globes for Data Visualisation in Augmented Reality. CHI Conference on Human Factors in Computing Systems. 2022
- Towards a hybrid user interface for the visual exploration of large biomolecular networks using virtual reality. Journal of Integrative Bioinformatics. 2022
- Human-Centred Feasibility Restoration. 27th International Conference on Principles and Practice of Constraint Programming (CP 2021). 2021
- Quantitative Data Visualisation on Virtual Globes. CHI Conference on Human Factors in Computing Systems. 2021
- Maps Around Me. Proceedings of the ACM on Human-Computer Interaction. 1-20. 2020
- Augmented Reality Map Navigation with Freehand Gestures. 2019 IEEE Conference on Virtual Reality and 3D User Interfaces (VR). 2019
- Viewpoint Selection for Shape Comparison of Mode Water Regions in a VR Space. 2019 23rd International Conference Information Visualisation (IV). 2019
- Process Plant Layout Optimization: Equipment Allocation. Lecture Notes in Computer Science. 473-489. 2018
- Spatio-Temporal Visualization of Tweet Data around Tokyo Disneyland Using VR. Proceedings of the 23rd International Conference on Intelligent User Interfaces Companion. 1-2. 2018
- VR System for Spatio-Temporal Visualization of Tweet Data. 2018 22nd International Conference Information Visualisation (IV). 2018
- An Optimization Model for 3D Pipe Routing with Flexibility Constraints. Lecture Notes in Computer Science. 321-337. 2017
- Immersive Isosurface Visualisation for Engineering Datasets. 2017 International Symposium on Big Data Visual Analytics (BDVA). 2017
- Streamline Selection for Comparative Visualization of 3D Fluid Simulation Result. 2017 21st International Conference Information Visualisation (IV). 2017
- ContextuWall: Peer Collaboration Using (Large) Displays. 2016 Big Data Visual Analytics (BDVA). 2016
- Immersive Analytics. 2015 Big Data Visual Analytics (BDVA). 2015
- FULL-LENGTH HPLC SIGNAL CLUSTERING AND BIOMARKER IDENTIFICATION IN TOMATO PLANTS. Proceedings of the 7th International FLINS Conference. 549-556. 2006
Sammelbandbeitrag
- Immersive Analytics Applications in Life and Health Sciences. Immersive Analytics. 289-330. 2018
- Information Visualization for Biological Data. Methods in Molecular Biology. 403-415. 2017

ORCID iD

https://orcid.org/0000-0002-1788-9593 (bestätigt)

Scopus-ID

25925695500

vollständiger Name

Tobias Czauderna

Raum

8-211

Besucheradresse

Am Schwanenteich 6b

Mittweida

09648

Deutschland

Postadresse

Technikumplatz 17

Mittweida

09648

Deutschland

KoautorInnen-Netzwerk

Kontaktdaten

czaudern@hs-mittweida.de

tobias.czauderna@hs-mittweida.de

+49 3727 581281